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442 ansi atcc asn 0002 standard  (ATCC)


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    Structured Review

    ATCC 442 ansi atcc asn 0002 standard
    442 Ansi Atcc Asn 0002 Standard, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 199 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/human+atcc/Human+Cell+Line+Authentication%3A+Standardization+of+STR+Profiling+Handbook/10__1158_slash_0008___5472__can___25___5347-161-21-22
    Average 96 stars, based on 199 article reviews
    442 ansi atcc asn 0002 standard - by Bioz Stars, 2026-11
    96/100 stars

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    Transduction:

    Article Title: Depletion of mitochondria in mammalian cells through enforced mitophagy.
    Article Snippet: .. • • • • table 1 | Cell lines for the generation of a stable YFP-Parkin-expressing cell line. cell line species source cell type application Phoenix amphotropic Human ATCC (cat. no. CRL-3213) Immortalized Viral particle generation MRC5 fibroblasts Human ECACC (cat. no. 05011802) Primary Viral transduction and generation of a stable YFP-Parkin-expressing cell line IMR-90 fibroblasts Human ECACC (cat. no. 85020204) Primary Viral transduction and generation of a stable YFP-Parkin-expressing cell line KP-4 Human RIKEN (cat. no. RCB1005) Immortalized Viral transduction and generation of a stable YFP-Parkin-expressing cell line U2OS Human ATCC (cat. no. HTB-96) Immortalized Viral transduction and generation of a stable YFP-Parkin-expressing cell line MCF-7 Human ATCC (cat. no. HTB-22) Immortalized Viral transduction and generation of a stable YFP-Parkin-expressing cell line HeLa Human ATCC (cat. no. CCL-2) Immortalized Viral transduction and generation of a stable YFP-Parkin-expressing cell line 3T3-SA Mouse ATCC (cat. no. CCL-92) Immortalized Viral transduction and generation of a stable YFP-Parkin-expressing cell line NIH-3T3 Mouse ATCC (cat. no. CRL-1658) Immortalized Viral transduction and generation of a stable YFP-Parkin-expressing cell line SVEC Mouse ATCC (cat. no. CRL-2167) Immortalized Viral transduction and generation of a stable YFP-Parkin-expressing cell line © 20 16 M ac m ill an P u b lis h er s L im it ed , p ar t o f S p ri n g er N at u re . .. A ll ri g h ts r es er ve d . 188 | VOL.12 NO.1 | 2017 | nature protocols table 2 | Antibodies for widespread mitophagy QC assays. antibody species Host reference/ manufacturer Western blot (dilution) Immunofluorescence (dilution) primary antibodies MitoProfile Membrane Integrity Antibody Cocktail Human Mouse Rat Cow Mouse monoclonal ab110414/Abcam 1:1,000 — TIMM44 Human Mouse Rabbit monoclonal ab194829/Abcam — 1:200 COXIV Human Mouse Rat Monkey Mouse monoclonal 11967/Cell Signaling — 1:200 SDHA Human Mouse Rabbit monoclonal #11998/Cell Signaling 1:1,000 1:100 NDUFB8 Human Mouse Mouse monoclonal ab110242/Abcam 1:1,000 — UQCRC2 Human Mouse Mouse monoclonal ab14745/Abcam 1:1,000 — TOMM20 Human Mouse Mouse monoclonal ab56783/Abcam 1:1,000 — GAPDH Human Mouse Rabbit monoclonal No.5174/Cell sigalling 1:5,000 — α-Tubulin Human Mouse Rat Mouse monoclonal T6074/Sigma-Aldrich 1:5,000 — Actin Mammals Yeast Fungi Mouse monoclonal 8691001/MP Biomedicals 1:5,000 — secondary antibodies Anti-rabbit Fluoresceinconjugated secondary antibody AlexaFluor 647 A21244/Molecular Probes — 1:300 Goat anti-rabbit IgG— HRP-conjugated A0545/Sigma-Aldrich 1:5,000 — Rabbit anti-mouse IgG— HRP-conjugated A2554/Sigma-Aldrich 1:5,000 — proceDure Generation of YFp-parkin-expressing cell line ● tIMInG 17–20 d crItIcal Steps 1–10 summarize the transfection of Phoenix amphotrophic cells with YFP-Parkin vector and the generation of retroviral particles (4–5 d).

    Ubiquitin Proteomics:

    Article Title: Engineering ERα degraders with pleiotropic ubiquitin ligase ligands maximizes therapeutic efficacy by co-opting distinct effector ligases.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Estrogen Receptor alpha Antibody Santa Cruz Biotechnology Cat# sc-8002; RRID: AB_627558 c-IAP1 (D5G9) Rabbit mAb Cell Signaling Technology Cat# 7065S; RRID: AB_10890862 XIAP (D2Z8W) Rabbit mAb Cell Signaling Technology Cat# 14334S; RRID: AB_2784533 Anti-MDM2 (Ab-1) Mouse mAb (IF2) Calbiochem Cat# OP46; RRID: AB_437744 CRBN antibody Proteintech Cat# 11435-1-AP; RRID: AB_2085739 VHL antibody Cell Signaling Technology Cat# 68547S; RRID: AB_2716279 MEK1/2 (D1A5) Rabbit mAb Cell Signaling Technology Cat# 8727S; RRID: AB_10829473 SP1 Antibody Cell Signaling Technology Cat# 5931S; RRID: AB_10621245 Sp1 Antibody (PEP 2) Santa Cruz Biotechnology Cat# sc-59; RRID: AB_2171050 β-Tubulin (9F3) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 5346S; RRID: AB_1950376 GAPDH (14C10) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 3683S; RRID: AB_1642205 Cullin 2 Polyclonal Antibody Invitrogen Cat# 51-1800; RRID: AB_87649 Ubiquitin Antibody (P4D1) Santa Cruz Biotechnology Cat# sc-8017; RRID: AB_628423 NF-κB2 p100/p52 Antibody Cell Signaling Technology Cat# 4882S; RRID: AB_10695537 β-Actin (D6A8) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 12620S; RRID: AB_2797972 CD3 Monoclonal Antibody (OKT3) Thermo Fisher Scientific Cat# 16-0037; RRID: AB_468855 CD28 Monoclonal Antibody (CD28.2) Thermo Fisher Scientific Cat# 16-0289; RRID: AB_2865689 Bacterial and virus strains NucLight Red lentivirus Sartorius BA-04887 Biological samples Primary Peripheral Blood Mononuclear Cells (PBMC), Normal, Human ATCC Cat# PCS-800-011 Chemicals, peptides, and recombinant proteins Avi-XIAP BIR2 (52-236) (C202A, C213G) Genentech N/A Avi-XIAP BIR3 (241-356) Genentech N/A His-Avi-ERa (305-R548) Genentech N/A VHL (55-213) Genentech N/A Elongin B (1-118) Genentech N/A Elongin C (17-112) Genentech N/A Fulvestrant Genentech CAS# 129453-61-8 endoxifen Genentech CAS# 112093-28-4 brilanestrant (GDC-0810) Genentech CAS# 1365888-06-7 GDC-0927 Genentech CAS# 1642297-01-5 giredestrant (GDC-9545) Genentech CAS# 1953133-47-5 Recombinant Human IL-2 Biolegend Cat# 589104 Critical commercial assays MILLIPLEX® MAP Human Cytokine/ Chemokine Magnetic Bead Panel - Premixed 30 Plex Merck Millipore Cat# HCYTMAG-60K-PX30 NE-PERTM Nuclear and Cytoplasmic Extraction Reagents ThermoFisher Scientific Cat# 78833 (Continued on next page) e1 Cell Chemical Biology 32, 694–709.e1–e35, May 15, 2025 .. All cell lines used in this study were obtained from and quality-controlled by Genentech cell line repository.

    Virus:

    Article Title: Engineering ERα degraders with pleiotropic ubiquitin ligase ligands maximizes therapeutic efficacy by co-opting distinct effector ligases.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Estrogen Receptor alpha Antibody Santa Cruz Biotechnology Cat# sc-8002; RRID: AB_627558 c-IAP1 (D5G9) Rabbit mAb Cell Signaling Technology Cat# 7065S; RRID: AB_10890862 XIAP (D2Z8W) Rabbit mAb Cell Signaling Technology Cat# 14334S; RRID: AB_2784533 Anti-MDM2 (Ab-1) Mouse mAb (IF2) Calbiochem Cat# OP46; RRID: AB_437744 CRBN antibody Proteintech Cat# 11435-1-AP; RRID: AB_2085739 VHL antibody Cell Signaling Technology Cat# 68547S; RRID: AB_2716279 MEK1/2 (D1A5) Rabbit mAb Cell Signaling Technology Cat# 8727S; RRID: AB_10829473 SP1 Antibody Cell Signaling Technology Cat# 5931S; RRID: AB_10621245 Sp1 Antibody (PEP 2) Santa Cruz Biotechnology Cat# sc-59; RRID: AB_2171050 β-Tubulin (9F3) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 5346S; RRID: AB_1950376 GAPDH (14C10) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 3683S; RRID: AB_1642205 Cullin 2 Polyclonal Antibody Invitrogen Cat# 51-1800; RRID: AB_87649 Ubiquitin Antibody (P4D1) Santa Cruz Biotechnology Cat# sc-8017; RRID: AB_628423 NF-κB2 p100/p52 Antibody Cell Signaling Technology Cat# 4882S; RRID: AB_10695537 β-Actin (D6A8) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 12620S; RRID: AB_2797972 CD3 Monoclonal Antibody (OKT3) Thermo Fisher Scientific Cat# 16-0037; RRID: AB_468855 CD28 Monoclonal Antibody (CD28.2) Thermo Fisher Scientific Cat# 16-0289; RRID: AB_2865689 Bacterial and virus strains NucLight Red lentivirus Sartorius BA-04887 Biological samples Primary Peripheral Blood Mononuclear Cells (PBMC), Normal, Human ATCC Cat# PCS-800-011 Chemicals, peptides, and recombinant proteins Avi-XIAP BIR2 (52-236) (C202A, C213G) Genentech N/A Avi-XIAP BIR3 (241-356) Genentech N/A His-Avi-ERa (305-R548) Genentech N/A VHL (55-213) Genentech N/A Elongin B (1-118) Genentech N/A Elongin C (17-112) Genentech N/A Fulvestrant Genentech CAS# 129453-61-8 endoxifen Genentech CAS# 112093-28-4 brilanestrant (GDC-0810) Genentech CAS# 1365888-06-7 GDC-0927 Genentech CAS# 1642297-01-5 giredestrant (GDC-9545) Genentech CAS# 1953133-47-5 Recombinant Human IL-2 Biolegend Cat# 589104 Critical commercial assays MILLIPLEX® MAP Human Cytokine/ Chemokine Magnetic Bead Panel - Premixed 30 Plex Merck Millipore Cat# HCYTMAG-60K-PX30 NE-PERTM Nuclear and Cytoplasmic Extraction Reagents ThermoFisher Scientific Cat# 78833 (Continued on next page) e1 Cell Chemical Biology 32, 694–709.e1–e35, May 15, 2025 .. All cell lines used in this study were obtained from and quality-controlled by Genentech cell line repository.

    Recombinant:

    Article Title: Engineering ERα degraders with pleiotropic ubiquitin ligase ligands maximizes therapeutic efficacy by co-opting distinct effector ligases.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Estrogen Receptor alpha Antibody Santa Cruz Biotechnology Cat# sc-8002; RRID: AB_627558 c-IAP1 (D5G9) Rabbit mAb Cell Signaling Technology Cat# 7065S; RRID: AB_10890862 XIAP (D2Z8W) Rabbit mAb Cell Signaling Technology Cat# 14334S; RRID: AB_2784533 Anti-MDM2 (Ab-1) Mouse mAb (IF2) Calbiochem Cat# OP46; RRID: AB_437744 CRBN antibody Proteintech Cat# 11435-1-AP; RRID: AB_2085739 VHL antibody Cell Signaling Technology Cat# 68547S; RRID: AB_2716279 MEK1/2 (D1A5) Rabbit mAb Cell Signaling Technology Cat# 8727S; RRID: AB_10829473 SP1 Antibody Cell Signaling Technology Cat# 5931S; RRID: AB_10621245 Sp1 Antibody (PEP 2) Santa Cruz Biotechnology Cat# sc-59; RRID: AB_2171050 β-Tubulin (9F3) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 5346S; RRID: AB_1950376 GAPDH (14C10) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 3683S; RRID: AB_1642205 Cullin 2 Polyclonal Antibody Invitrogen Cat# 51-1800; RRID: AB_87649 Ubiquitin Antibody (P4D1) Santa Cruz Biotechnology Cat# sc-8017; RRID: AB_628423 NF-κB2 p100/p52 Antibody Cell Signaling Technology Cat# 4882S; RRID: AB_10695537 β-Actin (D6A8) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 12620S; RRID: AB_2797972 CD3 Monoclonal Antibody (OKT3) Thermo Fisher Scientific Cat# 16-0037; RRID: AB_468855 CD28 Monoclonal Antibody (CD28.2) Thermo Fisher Scientific Cat# 16-0289; RRID: AB_2865689 Bacterial and virus strains NucLight Red lentivirus Sartorius BA-04887 Biological samples Primary Peripheral Blood Mononuclear Cells (PBMC), Normal, Human ATCC Cat# PCS-800-011 Chemicals, peptides, and recombinant proteins Avi-XIAP BIR2 (52-236) (C202A, C213G) Genentech N/A Avi-XIAP BIR3 (241-356) Genentech N/A His-Avi-ERa (305-R548) Genentech N/A VHL (55-213) Genentech N/A Elongin B (1-118) Genentech N/A Elongin C (17-112) Genentech N/A Fulvestrant Genentech CAS# 129453-61-8 endoxifen Genentech CAS# 112093-28-4 brilanestrant (GDC-0810) Genentech CAS# 1365888-06-7 GDC-0927 Genentech CAS# 1642297-01-5 giredestrant (GDC-9545) Genentech CAS# 1953133-47-5 Recombinant Human IL-2 Biolegend Cat# 589104 Critical commercial assays MILLIPLEX® MAP Human Cytokine/ Chemokine Magnetic Bead Panel - Premixed 30 Plex Merck Millipore Cat# HCYTMAG-60K-PX30 NE-PERTM Nuclear and Cytoplasmic Extraction Reagents ThermoFisher Scientific Cat# 78833 (Continued on next page) e1 Cell Chemical Biology 32, 694–709.e1–e35, May 15, 2025 .. All cell lines used in this study were obtained from and quality-controlled by Genentech cell line repository.

    Article Title: Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth.
    Article Snippet: Article Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth

    Extraction:

    Article Title: Engineering ERα degraders with pleiotropic ubiquitin ligase ligands maximizes therapeutic efficacy by co-opting distinct effector ligases.
    Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Estrogen Receptor alpha Antibody Santa Cruz Biotechnology Cat# sc-8002; RRID: AB_627558 c-IAP1 (D5G9) Rabbit mAb Cell Signaling Technology Cat# 7065S; RRID: AB_10890862 XIAP (D2Z8W) Rabbit mAb Cell Signaling Technology Cat# 14334S; RRID: AB_2784533 Anti-MDM2 (Ab-1) Mouse mAb (IF2) Calbiochem Cat# OP46; RRID: AB_437744 CRBN antibody Proteintech Cat# 11435-1-AP; RRID: AB_2085739 VHL antibody Cell Signaling Technology Cat# 68547S; RRID: AB_2716279 MEK1/2 (D1A5) Rabbit mAb Cell Signaling Technology Cat# 8727S; RRID: AB_10829473 SP1 Antibody Cell Signaling Technology Cat# 5931S; RRID: AB_10621245 Sp1 Antibody (PEP 2) Santa Cruz Biotechnology Cat# sc-59; RRID: AB_2171050 β-Tubulin (9F3) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 5346S; RRID: AB_1950376 GAPDH (14C10) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 3683S; RRID: AB_1642205 Cullin 2 Polyclonal Antibody Invitrogen Cat# 51-1800; RRID: AB_87649 Ubiquitin Antibody (P4D1) Santa Cruz Biotechnology Cat# sc-8017; RRID: AB_628423 NF-κB2 p100/p52 Antibody Cell Signaling Technology Cat# 4882S; RRID: AB_10695537 β-Actin (D6A8) Rabbit mAb (HRP Conjugate) Cell Signaling Technology Cat# 12620S; RRID: AB_2797972 CD3 Monoclonal Antibody (OKT3) Thermo Fisher Scientific Cat# 16-0037; RRID: AB_468855 CD28 Monoclonal Antibody (CD28.2) Thermo Fisher Scientific Cat# 16-0289; RRID: AB_2865689 Bacterial and virus strains NucLight Red lentivirus Sartorius BA-04887 Biological samples Primary Peripheral Blood Mononuclear Cells (PBMC), Normal, Human ATCC Cat# PCS-800-011 Chemicals, peptides, and recombinant proteins Avi-XIAP BIR2 (52-236) (C202A, C213G) Genentech N/A Avi-XIAP BIR3 (241-356) Genentech N/A His-Avi-ERa (305-R548) Genentech N/A VHL (55-213) Genentech N/A Elongin B (1-118) Genentech N/A Elongin C (17-112) Genentech N/A Fulvestrant Genentech CAS# 129453-61-8 endoxifen Genentech CAS# 112093-28-4 brilanestrant (GDC-0810) Genentech CAS# 1365888-06-7 GDC-0927 Genentech CAS# 1642297-01-5 giredestrant (GDC-9545) Genentech CAS# 1953133-47-5 Recombinant Human IL-2 Biolegend Cat# 589104 Critical commercial assays MILLIPLEX® MAP Human Cytokine/ Chemokine Magnetic Bead Panel - Premixed 30 Plex Merck Millipore Cat# HCYTMAG-60K-PX30 NE-PERTM Nuclear and Cytoplasmic Extraction Reagents ThermoFisher Scientific Cat# 78833 (Continued on next page) e1 Cell Chemical Biology 32, 694–709.e1–e35, May 15, 2025 .. All cell lines used in this study were obtained from and quality-controlled by Genentech cell line repository.

    Polymerase Chain Reaction:

    Article Title: Identification of cell culture contaminants among Mollicutes species by a PCR based assay
    Article Snippet: .. Nr of cells Detection of per PCR Background Internal Species Source assay Noise Control Drosophila Invitrogen (11496- 10-106 − + 015) Mouse ATCC (CRL-2036, 1000-106 − + TIB-158) Human ATCC (CCL-119, 1000-106 − + CCL-114) Monkey ATCC (CCL-26, 1000-106 − + CRL-1805, CRL- 1688, CRL-1576) Hamster ATCC (CRL-1859, 1000-106 − + CCL-61) Rat ATCC (CCL-216, 1000-106 − + CRL-1607) B. subtilis ATCC (6051) 1-5 × 106 − + E. faecalis ATCC (19433) 1-5 × 106 − + C. albicans ATCC 10231 1-6 × 106 − + A. versicolor ATCC (11730) 1-2 × 106 − + C. cladosporiodes ATCC (38810) 1-1.7 × 106 − + E. coli ATCC (11775) 1-5 × 106 Amplification + over 5 × 104 cells TABLE 5 Detection of Mycoplasma infection in various infected cell lines. ..

    Article Title: Structural and molecular insights into novel surface-exposed mucus adhesins from Lactobacillus reuteri human strains.
    Article Snippet: .. Strain Alternative name Genome sequence available (GOLD ID) Host DSM 20016T F275 Gc00573 Human JCM 1112T F275 Gc00786 Human ATCC PTA 6475 MM4-1a Gi01862 Human ATCC PTA 6475 lar_0958 KO 6475-KO – Human ATCC PTA 4659 MM2–3 Gi03770 Human ATCC 55730 SD2112 Gc01917 Human CF48-3A – Gi02800 Human CF4-6g – – Human LMS11-3 – – Human ATCC PTA 5289 FJ1 – Human MF2–3 – – Human MM3-1a – – Human MF14-c – – Human DSM 17938 Plasmid-minus version of ATCC 55730/SD2112 Gc01917 Human sr11 – – Human ATCC 53608 1063 Gi09161 Pig 1063N – – Pig ATCC 55739 – – Pig JW2015 – – Pig I5007 – Gi0050192 Pig lp167-67 – – Pig 3c6 – – Pig 20-2 – – Pig cr – – Rat one-one – – Rat 100-23 – Gi00762 Rat DSM 17509 Plasmid-minus version of 100-23 Gi00762 Rat N2D – – Rat R2LC – – Rat TD1 – Gi0052085 Rat ml1 – – Mouse #20 – – Mouse r13 – – Mouse Lr4020 – – Mouse LB54 – – Chicken © 2014 John Wiley & Sons Ltd, Molecular Microbiology, 92, 543–556 further assessed by PCR using primers designed against JCM 1112T Lar_0958 repeat 1 (residues 577–672), which is 100% identical to repeat regions 2, 3 and 4 (Fig 1A). .. DNA products of the expected size were generated in six of the 29 strains tested, DSM 20016T, ATCC PTA 6475, CF4-6g, ATCC PTA 5289, LMS11-3 and MM3-1a (Fig. S1A and B).

    Control:

    Article Title: Identification of cell culture contaminants among Mollicutes species by a PCR based assay
    Article Snippet: .. Nr of cells Detection of per PCR Background Internal Species Source assay Noise Control Drosophila Invitrogen (11496- 10-106 − + 015) Mouse ATCC (CRL-2036, 1000-106 − + TIB-158) Human ATCC (CCL-119, 1000-106 − + CCL-114) Monkey ATCC (CCL-26, 1000-106 − + CRL-1805, CRL- 1688, CRL-1576) Hamster ATCC (CRL-1859, 1000-106 − + CCL-61) Rat ATCC (CCL-216, 1000-106 − + CRL-1607) B. subtilis ATCC (6051) 1-5 × 106 − + E. faecalis ATCC (19433) 1-5 × 106 − + C. albicans ATCC 10231 1-6 × 106 − + A. versicolor ATCC (11730) 1-2 × 106 − + C. cladosporiodes ATCC (38810) 1-1.7 × 106 − + E. coli ATCC (11775) 1-5 × 106 Amplification + over 5 × 104 cells TABLE 5 Detection of Mycoplasma infection in various infected cell lines. ..

    Article Title: Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth.
    Article Snippet: Article Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth

    Amplification:

    Article Title: Identification of cell culture contaminants among Mollicutes species by a PCR based assay
    Article Snippet: .. Nr of cells Detection of per PCR Background Internal Species Source assay Noise Control Drosophila Invitrogen (11496- 10-106 − + 015) Mouse ATCC (CRL-2036, 1000-106 − + TIB-158) Human ATCC (CCL-119, 1000-106 − + CCL-114) Monkey ATCC (CCL-26, 1000-106 − + CRL-1805, CRL- 1688, CRL-1576) Hamster ATCC (CRL-1859, 1000-106 − + CCL-61) Rat ATCC (CCL-216, 1000-106 − + CRL-1607) B. subtilis ATCC (6051) 1-5 × 106 − + E. faecalis ATCC (19433) 1-5 × 106 − + C. albicans ATCC 10231 1-6 × 106 − + A. versicolor ATCC (11730) 1-2 × 106 − + C. cladosporiodes ATCC (38810) 1-1.7 × 106 − + E. coli ATCC (11775) 1-5 × 106 Amplification + over 5 × 104 cells TABLE 5 Detection of Mycoplasma infection in various infected cell lines. ..

    Infection:

    Article Title: Identification of cell culture contaminants among Mollicutes species by a PCR based assay
    Article Snippet: .. Nr of cells Detection of per PCR Background Internal Species Source assay Noise Control Drosophila Invitrogen (11496- 10-106 − + 015) Mouse ATCC (CRL-2036, 1000-106 − + TIB-158) Human ATCC (CCL-119, 1000-106 − + CCL-114) Monkey ATCC (CCL-26, 1000-106 − + CRL-1805, CRL- 1688, CRL-1576) Hamster ATCC (CRL-1859, 1000-106 − + CCL-61) Rat ATCC (CCL-216, 1000-106 − + CRL-1607) B. subtilis ATCC (6051) 1-5 × 106 − + E. faecalis ATCC (19433) 1-5 × 106 − + C. albicans ATCC 10231 1-6 × 106 − + A. versicolor ATCC (11730) 1-2 × 106 − + C. cladosporiodes ATCC (38810) 1-1.7 × 106 − + E. coli ATCC (11775) 1-5 × 106 Amplification + over 5 × 104 cells TABLE 5 Detection of Mycoplasma infection in various infected cell lines. ..

    Sequencing:

    Article Title: Structural and molecular insights into novel surface-exposed mucus adhesins from Lactobacillus reuteri human strains.
    Article Snippet: .. Strain Alternative name Genome sequence available (GOLD ID) Host DSM 20016T F275 Gc00573 Human JCM 1112T F275 Gc00786 Human ATCC PTA 6475 MM4-1a Gi01862 Human ATCC PTA 6475 lar_0958 KO 6475-KO – Human ATCC PTA 4659 MM2–3 Gi03770 Human ATCC 55730 SD2112 Gc01917 Human CF48-3A – Gi02800 Human CF4-6g – – Human LMS11-3 – – Human ATCC PTA 5289 FJ1 – Human MF2–3 – – Human MM3-1a – – Human MF14-c – – Human DSM 17938 Plasmid-minus version of ATCC 55730/SD2112 Gc01917 Human sr11 – – Human ATCC 53608 1063 Gi09161 Pig 1063N – – Pig ATCC 55739 – – Pig JW2015 – – Pig I5007 – Gi0050192 Pig lp167-67 – – Pig 3c6 – – Pig 20-2 – – Pig cr – – Rat one-one – – Rat 100-23 – Gi00762 Rat DSM 17509 Plasmid-minus version of 100-23 Gi00762 Rat N2D – – Rat R2LC – – Rat TD1 – Gi0052085 Rat ml1 – – Mouse #20 – – Mouse r13 – – Mouse Lr4020 – – Mouse LB54 – – Chicken © 2014 John Wiley & Sons Ltd, Molecular Microbiology, 92, 543–556 further assessed by PCR using primers designed against JCM 1112T Lar_0958 repeat 1 (residues 577–672), which is 100% identical to repeat regions 2, 3 and 4 (Fig 1A). .. DNA products of the expected size were generated in six of the 29 strains tested, DSM 20016T, ATCC PTA 6475, CF4-6g, ATCC PTA 5289, LMS11-3 and MM3-1a (Fig. S1A and B).

    Plasmid Preparation:

    Article Title: Structural and molecular insights into novel surface-exposed mucus adhesins from Lactobacillus reuteri human strains.
    Article Snippet: .. Strain Alternative name Genome sequence available (GOLD ID) Host DSM 20016T F275 Gc00573 Human JCM 1112T F275 Gc00786 Human ATCC PTA 6475 MM4-1a Gi01862 Human ATCC PTA 6475 lar_0958 KO 6475-KO – Human ATCC PTA 4659 MM2–3 Gi03770 Human ATCC 55730 SD2112 Gc01917 Human CF48-3A – Gi02800 Human CF4-6g – – Human LMS11-3 – – Human ATCC PTA 5289 FJ1 – Human MF2–3 – – Human MM3-1a – – Human MF14-c – – Human DSM 17938 Plasmid-minus version of ATCC 55730/SD2112 Gc01917 Human sr11 – – Human ATCC 53608 1063 Gi09161 Pig 1063N – – Pig ATCC 55739 – – Pig JW2015 – – Pig I5007 – Gi0050192 Pig lp167-67 – – Pig 3c6 – – Pig 20-2 – – Pig cr – – Rat one-one – – Rat 100-23 – Gi00762 Rat DSM 17509 Plasmid-minus version of 100-23 Gi00762 Rat N2D – – Rat R2LC – – Rat TD1 – Gi0052085 Rat ml1 – – Mouse #20 – – Mouse r13 – – Mouse Lr4020 – – Mouse LB54 – – Chicken © 2014 John Wiley & Sons Ltd, Molecular Microbiology, 92, 543–556 further assessed by PCR using primers designed against JCM 1112T Lar_0958 repeat 1 (residues 577–672), which is 100% identical to repeat regions 2, 3 and 4 (Fig 1A). .. DNA products of the expected size were generated in six of the 29 strains tested, DSM 20016T, ATCC PTA 6475, CF4-6g, ATCC PTA 5289, LMS11-3 and MM3-1a (Fig. S1A and B).

    other:

    Article Title: Confinement controls the directional cell responses to fluid forces.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Monoclonal Anti-b-Actin antibody produced in mouse Sigma-Aldrich Catalog #: A3854; RRID: N/A Lamin A/C (4C11) Mouse mAb Cell Signaling Catalog #: 4777; RRID: AB_10545756 Anti-Myosin IIA, non-muscle antibody produced in rabbit Sigma-Aldrich Catalog #: M8064; RRID: AB_260673 Anti-mouse IgG, HRP-linked Antibody Cell Signaling Catalog #: 7076S; RRID: AB_330924 Anti-rabbit IgG, HRP-linked Antibody Cell Signaling Catalog #: 7074S; RRID: AB_2099233 Mouse IgG2A Isotype Control R&D Systems Catalog #: MAB003; RRID: AB_357345 CCR7 Blocking Antibody R&D Systems Catalog #: MAB197; RRID: AB_2072803 Chemicals, peptides, and recombinant proteins Blebbistatin BioVision Catalog #: 2406-1 Y-27632 dihydrochloride Sigma-Aldrich Catalog #: Y0503 Latrunculin A R&D Systems Catalog #: 3973 Ionomycin calcium salt from Streptomyces conglobatus Sigma-Aldrich Catalog #: I0634 BAPTA-AM Sigma-Aldrich Catalog #: 196419 EIPA Enzo Life Sciences Catalog #: NC1049834 Trichostatin A Sigma-Aldrich Catalog #: T8552 Methylstat Sigma-Aldrich Catalog #: SML0343 Critical commercial assays pHrodo Red AM intracellular pH indicators Invitrogen Catalog #: P35372 Fluo-4 DirectTM Calcium Assay Kit Invitrogen Catalog #: F10471 Experimental models: cell lines Wild type HT-1080 fibrosarcoma cells (Wisniewski et al.)61 N/A MDA-MB-231 breast cancer cells ATCC Catalog #: HTB-26 Adipose-Derived Mesenchymal Stem Cells; Normal, Human ATCC Catalog #: PCS-500-011 Bone Marrow-Derived Mesenchymal Stem Cells; Normal, Human ATCC Catalog #: PCS-500-012 HT-1080 cells expressing LifeAct-GFP and H2B-mChery (Wisniewski et al.)61 N/A HT-1080 cells expressing optoGEF-RhoA and CAAX-CIBN-GFP (Yankaskas et al.)40 N/A HT-1080 cells expressing EGFP-KASH2ext (Mistriotis et al.)39 N/A HT-1080 cells expressing EGFP-KASH2 (Mistriotis et al.)39 N/A HT-1080 cells expressing YFP or TRPM7-YFP (Yankaskas et al.)40 N/A HT-1080 cells expressing TRPM7-YFP (Yankaskas et al.)40 N/A HT-1080 scramble control (Mistriotis et al.)39 N/A shMYH9 HT-1080 cells (Mistriotis et al.)39 N/A shLMNA HT-1080 cells (Wisniewski et al.)61 N/A Isogenic breast cancer cell lines- 4T1 (Aslakson et al.), (Dexter et al.), (Bell et al.)48–50 N/A Isogenic breast cancer cell lines- 4T07 (Aslakson et al.), (Dexter et al.), (Bell et al.)48–50 N/A Isogenic breast cancer cell lines- 67NR (Aslakson et al.), (Dexter et al.), (Bell et al.)48–50 N/A (Continued on next page) 16 Cell Reports 43, 114692, September 24, 2024

    High Performance Liquid Chromatography:

    Article Title: Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth.
    Article Snippet: Article Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth

    Cell Culture:

    Article Title: Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth.
    Article Snippet: Article Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth

    Staining:

    Article Title: Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth.
    Article Snippet: Article Gene editing and synthetically accessible inhibitors reveal role for TPC2 in HCC cell proliferation and tumor growth



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    MiR-136-3p content in cell culture medium and uptake of extracellular miR-136-3p into cultured myotubes. MiRNA content in (A) human myotubes and (B) human pancreatic islets culture media. Results were first normalized using RNU1A1 and then presented in relation to miR-23a-3p content for n = 4 different donors for myotubes cultures and n = 4 donors for human islets. Left panel (C) shows bright-field image of cultured human myotubes and right panel (C) shows a representative fluorescence image of cultured human myotubes with cells exposed to human serum-derived EVs loaded with Cy3-miR-136-3p. Cy3 fluorescence (red) is detected in the whole cytoplasm of the human myotubes. (D) Representative fluorescence image of human myotubes exposed to HEK293 culture medium with EVs loaded with Cy3-miR-136-3p (red). (E) Representative image of human myotubes exposed to EVs loaded with TexasRed-labeled with a control RNA (orange). Nuclear Hoechst staining is shown in blue. Scale bar = 100 μm. EVs = extracellular vesicles; HEK293 = human embryonic kidney; miR = microRNA; Rel = relative; RNU1A1 = U1 small nuclear RNA.

    Journal: Journal of Sport and Health Science

    Article Title: Exercise training-induced extracellular miR-136-3p modulates glucose uptake and myogenesis through targeting of NRDC in human skeletal muscle

    doi: 10.1016/j.jshs.2025.101091

    Figure Lengend Snippet: MiR-136-3p content in cell culture medium and uptake of extracellular miR-136-3p into cultured myotubes. MiRNA content in (A) human myotubes and (B) human pancreatic islets culture media. Results were first normalized using RNU1A1 and then presented in relation to miR-23a-3p content for n = 4 different donors for myotubes cultures and n = 4 donors for human islets. Left panel (C) shows bright-field image of cultured human myotubes and right panel (C) shows a representative fluorescence image of cultured human myotubes with cells exposed to human serum-derived EVs loaded with Cy3-miR-136-3p. Cy3 fluorescence (red) is detected in the whole cytoplasm of the human myotubes. (D) Representative fluorescence image of human myotubes exposed to HEK293 culture medium with EVs loaded with Cy3-miR-136-3p (red). (E) Representative image of human myotubes exposed to EVs loaded with TexasRed-labeled with a control RNA (orange). Nuclear Hoechst staining is shown in blue. Scale bar = 100 μm. EVs = extracellular vesicles; HEK293 = human embryonic kidney; miR = microRNA; Rel = relative; RNU1A1 = U1 small nuclear RNA.

    Article Snippet: Human embryonic kidney (HEK293) cells were obtained from American Type Culture Collection (ATCC) and cultured in high-glucose (4.5 g/L) Dulbecco's Modified Eagle Medium (DMEM; Thermo Fisher Scientific, Waltham, MA, USA), supplemented with 10% (vol/vol) FBS.

    Techniques: Cell Culture, Fluorescence, Derivative Assay, Labeling, Control, Staining

    NRDC is a direct target of miR-136-3p in human myotubes. Skeletal muscle NRDC mRNA is responsive to training and inactivity. (A) Tissue mRNA expression of NRDC from the Human Protein Atlas database showing enriched expression of NRDC in human skeletal muscle. (B) The miR-136-3p target site in the NRDC gene is highly conserved in mammals. (C) Luciferase activity in HEK293 cells co-transfected the NRDC 3’UTR and miR-136-3p with or without anti-miR136-3p inhibitors. miR-136-3p transfection downregulates NRDC (D) mRNA and (E) representative image of protein abundance in human myotubes. (F) Publicly available data ( GSE14413 ) showing NRDC mRNA expression in human skeletal muscle of healthy young participants after 6 weeks of endurance training ( n = 8). (G) Publicly available data ( GSE120862 ) showing NRDC mRNA expression in human skeletal muscle of healthy young participants after 2 months of aerobic training ( n = 10). (H) Publicly available data ( GSE14901 ) showing NRDC mRNA expression in human skeletal muscle of healthy young participants after 14 days of immobilization ( n = 24). * p < 0.05, ** p < 0.005. GSE = gene set enrichment; HEK293 = human embryonic kidney; miR = microRNA; NC = negative control; NRDC = nardilysin convertase; nTPM = normalized transcripts per million; si NRDC = small interfering RNA of NRDC ; UTR = untranslated region.

    Journal: Journal of Sport and Health Science

    Article Title: Exercise training-induced extracellular miR-136-3p modulates glucose uptake and myogenesis through targeting of NRDC in human skeletal muscle

    doi: 10.1016/j.jshs.2025.101091

    Figure Lengend Snippet: NRDC is a direct target of miR-136-3p in human myotubes. Skeletal muscle NRDC mRNA is responsive to training and inactivity. (A) Tissue mRNA expression of NRDC from the Human Protein Atlas database showing enriched expression of NRDC in human skeletal muscle. (B) The miR-136-3p target site in the NRDC gene is highly conserved in mammals. (C) Luciferase activity in HEK293 cells co-transfected the NRDC 3’UTR and miR-136-3p with or without anti-miR136-3p inhibitors. miR-136-3p transfection downregulates NRDC (D) mRNA and (E) representative image of protein abundance in human myotubes. (F) Publicly available data ( GSE14413 ) showing NRDC mRNA expression in human skeletal muscle of healthy young participants after 6 weeks of endurance training ( n = 8). (G) Publicly available data ( GSE120862 ) showing NRDC mRNA expression in human skeletal muscle of healthy young participants after 2 months of aerobic training ( n = 10). (H) Publicly available data ( GSE14901 ) showing NRDC mRNA expression in human skeletal muscle of healthy young participants after 14 days of immobilization ( n = 24). * p < 0.05, ** p < 0.005. GSE = gene set enrichment; HEK293 = human embryonic kidney; miR = microRNA; NC = negative control; NRDC = nardilysin convertase; nTPM = normalized transcripts per million; si NRDC = small interfering RNA of NRDC ; UTR = untranslated region.

    Article Snippet: Human embryonic kidney (HEK293) cells were obtained from American Type Culture Collection (ATCC) and cultured in high-glucose (4.5 g/L) Dulbecco's Modified Eagle Medium (DMEM; Thermo Fisher Scientific, Waltham, MA, USA), supplemented with 10% (vol/vol) FBS.

    Techniques: Expressing, Luciferase, Activity Assay, Transfection, Quantitative Proteomics, Negative Control, Small Interfering RNA